Now that I have some time to post after being away for the past few days I noticed that Bill pretty much gave you all the update. I basically got my tune dialed in with myself in the car, running 11.7 AFR and 19-19.5 degrees of timing, zero knock. I then piled three other friends into the car and went WOT from 30-65 mph, just a quick pull. Compared to the day I was dialing in AFR and timing (about 45 degrees out) we had a cold spell come through and outside it was maybe 15 degrees outside. Between the change in temperature and added weight in the car, I assumed my AFR was a little leaner than 11.7 (probably more like 12.0-12.1) and with the 19.5 degrees of timing on 93, cylinder #3 got pissed and chipped the piston.
Now that I have put a little over 50 miles on the L36 bottom end (was the stock bottom end out of the car) and running a 3.5 pulley, I'm keeping things conservative on both boost and timing until I dial in the tune. So far the car runs great, trims are already spot on within -2 LTFT to 0 LTFT. Next is dial in AFR and this time I'll shoot for 11.4-11.5. Timing right now is about 14 degrees, may increase to 16 degrees (max).
I'm just glad I finally got the car back on the road and can enjoy it again. If any of you either have tuned top-swapped cars or are running a similar set-up, please chime in if you have any knowledge on what to tune differently, what to watch for, etc.
As Bill said, no data to back up the failure. I was watching my Aeroforces, saw maybe 1-3 degrees of knock. The refresh rate of the gauge may have prevented me from seeing 10+ degrees of KR for all i know at a given second. AFR on my wideband was high 11's, low 12's (leaner that day compared to when I was tuning the AFR/timing in 45 degree weather).