Ok first of all THANK YOU Bill!
Here are some responses in regards to your answer
1- It seems that the car has a northstar throttle body, I didnt change the gasket when I reinstalled it back after LIM replacement, I still need to clean the throttle body. I do hear a "hissing" sound going from the boost bypass valve in front of the supercharger to the vac tree on top , maybe thats the problem?
2- The clicking sound is before the engine could turn over. Seems like the starter solenoid is not engaging. It has a new starter and it also did this with the older starter that the reason why it was replace. Maybe it has bad connection?
3- Is there a diagram where all those lines hook up to? I tried connecting the big connectors and they wont connect.
4- All the suspension parts where checked when I took it for the alignment. I was told everything looks good , does the steering wheel column have a part that gets worn out after a while that will cause this problem?
Thanks again for the response and help ..