Alright..let's settle in....and if we can, keep this to this thread. Second and third threads on the same thing get confusing.
1. Bogging, this sounds vacuum leak. Did you do the TB gasket and cleaning? Did you replace the injector o-rings, have you sprayed with TB cleaner to find vacuum leaks?
2. What do you mean click click click click, we need more info. is this a noise while the motor is turning over via the starter? Is this an interior noise, is the motor being turned over by the starter? Did this noise exisit before you changed the starter and after the lim, before the lim..you get the point.. detail it out please.
3. Put the two big connectors together. That's an inline for I think the Hvac system. The little connector looks like a blend door actuator connector, really it looks to me that a novice changed something under there and didn't finish reconnecting things. Hook that vac line back up too. Now the vac line under the hood.. find it.. fix it .. rubber vacuum line is fine. That's the vacuum for the dash vs vent vs floor actuator. No vacuum...no control. Fix it up.. hook it up.
4. Check your tie rods, steering rack to subframe bolts, wheel bearings and all the other suspension stuff. If you need more info on how.. please say so and someone will hook it up.
This car doesn't sound so bad.. it's a 98 and w/o normal maintenance or someone that knows what they are doing.. things can get behind. Doesn't seem all that bad to me.