Ok, sorry for the very late reply. I tore the dash apart tonight and re-did the ground connections behind the stereo, under the metal sheet under the steering column, as well as the chassis ground by the battery. Same issues for the most part.
Since my last posting I pulled our key FOBs apart and saw that the solder joints were broken and have since fixed them. The remote start though still alarms when you try it with either FOB.
Blower motor has been running ever since I gave it a good pounding to the dash back in December.
Door locks aren't working except for the front passenger door, and that one always works.
Kind of at a loss now.