you shouldnt have to have anything "reprogrammed"
if its anything like my car, the aftermarket alarm is totally independent of the factory system. if i use the factory fob's, then the factory alarm is activated, and locks the doors.
i would guess that you just need a fob, and program it (programming steps i think are even in the manual, if they're not, ive got them cataloged here somewhere)
what are the fobs from that you have? we can see if they're compatible...
the dealer is gonna charge you at least an hours labor just to learn them to the car, id guess