Switch everything you did back and I wouldnt do that again.
The trans needs some TM, its not really the best idea to remove it all. Prolly wouldnt want to get rid of more than 15-20% of it.
Raising the shift points is pointless aswell, the car makes pretty much no power past 5500-5600 rpms, if anything raise it to 5400 and the car will rev to 5600-5700 before it shifts.