Funny, I just so happen to come across this thread and realized that I have somewhat of the same issue.. Just the another day i was looking into my engine bay and noticed that my motor is a lil off angle also. all my mounts are new but my two dog bone mounts are definately not parallel with each other.

Cradle mounts are new and torqued to 118lbs so im not really sure whats causing the motor to be off center like that. Crazy, i didnt know this was a common problem