I would keep using the "starting HP Tuners" thread, I just didn't bother changing the tune to only have PE enabled at 100% throttle. I'm just not comfortable enough to be on the road driving and not have the power enrichment option.
To add cylinder airmass, scroll your mouse over to the left side of the scanner and open the channels display. right click on an empty box and select add channel. when the page opens, at the top there will be an empty box where you can type, type in cylinder airmass and double click the top one, it should say something like "this is a generic sensor, would you like to continue?" you want the generic sensor.
on your graph, where it says timing advance and knock retard, all you need to do is right click one of them to open the graph in edit mode, then left click the parameter that says cylinder airmass, and re add it making sure it is a generic sensor for cylinder airmass. do the same thing for both timing and kr.
edit: I would keep resetting and having your fuel trims relearn every time you change your maf airflow table, and don't bother disabling the maf to tune the VE because it's just a backup for the maf and has very little effect on how your engine runs when the maf is working like it should.
here is a guide for you on HP Tuners forum:
http://www.hptuners.com/forum/showth...er-V3&p=419231