To finalize the ordeal with the car, it turns out the the intake manifold gaskets were not done correctly and air pockets were getting into the coolant passages which was causing the "overheating-type conditions". No matter how many times I bled the engine every time the engine ran it built up more air in the cooling system....a lose-lose situation. So this ends the mystery of the intercooler install taking a slight turn for the worse. Luckily it is winter cause if it was summer my engine would of been toast. Thanks to everyone that were here to help me out. This was a learning experience for getting the gaskets done right the first time around.