I have my shifting issue resolved. The shift knob was raised off of the lever. The U clip was bent and allowed the lever to go higher than it needed to be to properly operate. I pulled the U clip and used channel locks to bend it back properly. I reinstalled it and now we shift properly.
I have a couple small issues left (window wont roll up) possible bad motor. Going to get my test light out and investigate. Other than that I am just waiting on my new fuel pump.
Again Thanks everyone!