I'm confused. One of your issues is that you keep blocking stuff with rtv, yet you continue to put huge beads on. Are you putting it on BOTH LIM and blower? Unless something is seriously warped, your LIM and blower will be only a couple thousandths apart when you tighten them down. That's all your filling. If 99% is being squeezed out to your intake passage and PVC then you could use about 98% less.
If I'm missing something, and this is just what everyone is doing for an intercooler, then forgive my ignorance, I've just always thought less is more when using this stuff.