Ahhhh now we get more cluse.

Ok first thing I want you do is to check the firing order. And I mean definately follow every single wire the whole way.

Firewall
2...4...6

1...3...5
Radiator

Coil packs
3/6
2/5
1/4

On the coil, it doesn't matter which of the two posts the wire goes two because both fire at the same time. You can look at the top coil and have 3 or 6 hooked up to either of those posts.

It's sounding a bit like you have a couple wires crossed. Next up.. pull a plug and tell us what kind they are. If you arne't sure, take a pic and post it.

Get an overall pic of the motor too. We wanna see how clean and nice things are to see which wires are on it etc. Which coils..you get the point. Let's look this puppy over and get it running right.