For those who read this in the future with any of the above symptoms.. the problem turned out to be the Upper Intake Manifold (Plenum). When the old one was taken off, the LIM was FILLED with coolant. Scary stuff.. it could've ruined the motor. Luckily it wasnt running when it hyrdolocked.
An easy way to test is to take off the the intake... open up the throttle body to see any signs of coolant (fresh or residue). But that isn't always the case.. just mine.
For those who don't know (which I didn't prior to this) the plenums are defective and melt/corrode fast around the EGR valve. The new valve is much narrower so the heat of the aluminum won't melt the crappy plastic intakes.
New LIM gaskets, UIM/plenum with new gaskets, thermostat, plugs, and 3 oil changes... the system is running great. SES light went off on its own and now getting 25+ mpg.