If you can get a circuit breaker, that is great. I just use a maxi-fuse, although I will most likely find a fusible link when I get the time. The alternator is rated at 110A, so a 125A maxi-fuse should suffice:
Fuse, 125 amp, 32 VDC, Mega Fuse
You can find them at parts stores. Mine is actually a higher amperage, again do to availability at the time. This is the same setup I have run on another car, along with many other folks, with no issues. The fuse has always done its job.
To be fair, the absolute correct way to do it would be with another fusible link. Fusible links are "better" at protecting the circuit overall, without the potential for blowing under instantaneous spikes like fuses or circuit breakers. I would recommend something like this:
* Fusible Link
My opinion is that the best option is to include the listed fusible link with the alternator rewire, then remove the stock wiring from the circuit. I know that everyone says to leave the stock wiring connected, but that is going to be harder on the system...just like running two 8ga. wires in parallel is not the same as running one 4ga. wire!
You can go to the battery section of the parts store and find an assortment of length 4ga. wire that has eyelets on both ends. I went with the shortest I could find, because I made the routing as direct as possible, as at the time I was not considering rewiring the alternator. It cost me $5, then another $5 for the maxi-fuse. It is not tucked away as neatly as the alternator rewire "mod" but it is functional. My 2¢.